Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015824978.1_cds_XP_016502169.1_15839
CDS Infomation

[gene=LOC107820400] [db_xref=GeneID:107820400] [protein=WD repeat and HMG-box DNA-binding protein 1-like] [protein_id=XP_016502169.1] [location=complement(join(11375..11884,11980..12110,12218..12344,12438..12554,12631..12733,12815..12870,12959..13093,14187..14291,14718..14831,14950..15126,15433..16541,18343..18619))] [gbkey=CDS]
Sequence

ATGAAGATCAGATCCATTAAGATGCGAGAAGCTCACAAGAGCAGCAATGGCGTTGGGTCG
TTTTGCTCGGTTTTATGGGATCAGCAAGGCGAACACATCGTCACTGCGTCTTCTTCTGAT
TCTTCAATTTGCATTCAAGATGCTTTTTTGCCAGCTAATCCCCCTAAAATTGTTCGACAT
CATAGAGATGGCGTTACCGCTTTGGCTCTCAGCCCTAATTTCACCTGTCTGGCCTCCGGA
TCTGTTGACCATTCCGTCAAACTCTACAAATTTCCTGGAGGGGAGTTTGAGACAAATATT
ACCAGATTTACCTTGCCTATACGGACACTTGCTTTCAACAGATCTGGAACAATGCTGGCA
GCTGCTGGTGATGATGAAGGCATCAAACTTATAAATACCATTGATGGCTCGATCGCAAGA
GTTCTTAAAGGACATAGAGGGTCCATCACTGGCATAGCTTTTGATCCCAAAAGTGAATAC
CTGGCTTCAGTTGATTCAATAGGGACTGTCATGATCTGGGAACTCCAGTCAGGGAACACA
ATTCACGTTTTAAAAGGAATAGCTCCGGTCATTGGGTCTGATTTTTCTTCTATGAACATA
GTTGGCTGGAGTCCTGATGGGGAGCTATTAGCTGTTCCTAGCTTGAAAAATGATGTGGTG
ATGTATGACAGAGACACTGCAGAAAAACTGTTTTCACTTAGAGGTGATCATGTACAGCCC
ATTTGCTTTTTGTCGTGGTCACCAAATGGAAAGTATATGGCTACTTCTGGACTAGATAGA
CAAGTTTTGATATGGGATGTTGATAAGAAACAAGATATTGATCGGCAGAAATTTGATAAT
AGGGTAACTTGTATGGCGTGGAAACCAATTGGCAATGCATTGGCAGTAATTGACATCATG
GGAAAGTATGGTATCTGGGAATCAGCCGTACCTTCTTCAATGAGATCTCCCACGGAAAAT
GTTCCTGTTTTAGGTTCTAAAAATGGTCATGGTCTTCTTTTCTTTGATGAAGAGGAAGAA
AACCCAAGTGCATCTGGAAGTTTAAGTGACCTTGGAGAAGATAGCCACGGTGAATCTGAA
CCATTTAGCAGAAAAAGATTACGCAAACAGCATAGTTTTGATGATGGTTGGGAAGAAGAT
GCTAAAGAAGAGTTTGAGTTGCTTCCAAAAGCTGAACCTCGTAAGAAGGCTCCTCACGGT
CACACGGATAGTTCAGATAATAAAAGAAATGAGCTCAAGAATGTCCCAATTTCTGCAGGA
CAAAAAATGCAAGAAGCTTTTCAGCCAGGCACAACTCCACAGCTGCCTGGCAAAAGACGT
TTTCTATGTTACAGTATGCTTGGCAGTATAACCGCGATGGAGCATGATGGATACTCTCAC
ATAGAGATTGATTTTCATGACACAAGCAGTGGTCCCCGAGTCCCTGCAATGACTGATTAT
TTTGGTTTCACAATGGCTTCTTTAAATGAAAATGGAAGTGTATTTGCAAATCCATGCAAG
GGTGAGAAGAATATGAGTACACTCATGTATCGTCCTTTCAGTAGCTGGGCTAATAACAGT
GAGTGGTCAATGCGATTTGAAGAGGAAGAAGTAAGAGCAGTTGCACTAGGAACTGGTTGG
GTAGCTGCTGTTACAAGTTGTAATTTTCTTCGCATCTTCACTGAGGGTGGCCTGCAGAGA
CACATTCTTTCCCTCGACGGACCAGTGGTTACTGCAGTAGGCTATAAGGATGAACTTGCA
GTTGTCACACATGCATCTCCCCCTCTTCCCTCTAACGAACAGATTCTTGAATTTAGAGTC
TTCAATATTCGTAATGGAATACAACCTCGCCGAGGAAGACTTCCATTGACTCCTGGTTCA
TGTTTATCATGGTTTGGTTTTAGTGAAGAAGGCCATCTTAGTTCTTTTGACTCTAAGGGT
GTGCTAAGGGTATTTACTAATCAATATGGCGGCAGTTGGCTTCCCCTTTTCAGTGCCAGC
AAATTGAAGAAGCCAGAAGAAAACTATTGGGTTGTTGGGTTAAACACAAGCAAGTTGTTC
TGTGTCATTTGCAAATCCCCGGATTACTTCCCAGAGGCCACTCCGAAACCTATTCTCACT
CTGTTGGATCTTTCATTTCCTCTTGCTTCATCTGACCTTGGAGCAGAAAACCTGGAGAAT
GAATTTATAATGAATAATATGCATCTCCATCGGATTCAGAGCACAATTGAAGAAATGGAA
GCTGCTGGTGAGGACACCAGTTTGCTTGATGATGAGGCTTTTAACACTGATGCTGCTCTT
GATAGATGCATCCTGAGGCTCATTGCATCCTGCTGCAATGGTGATAAGCTAGTGAGAGCT
ACTGAACTCGTAAAGCTTCTGGCTTTGGAAAAATCAGTCAAAGGTGCTATAAAGCTTGTT
ACAGCCCTCAAACTACCAAATTTGGCAGAGCGCTTTAATGCCATATTGGAGGAAAGGTTG
AATAAAGAAACAACTGGTAGCACAATTCCTGCATCCACTGAGTTGAAATGCGATACCTCC
TTTAATGCTCAGGCTGCATTAACCAAGTCCCATTTTACGGCTGAAAGCAGCAAAAGATTG
GAACTAGAGAGTTCCCCCTCCCAAAATTTGTTAGCTCCTTCTCTCACGAAAAAACGGTCA
TTGGAGGAACCAACCAAGGATGTAAATATGGATACAGAAAATGCTAGAGCCAGAAAATTG
GAAATGGCAAGGGAGTTCAAAAATGCATTTGATTTGAAGAATTCTAAAAAATTGAAGGAT
GAAAAGGATAAGGCGGATGAAGTGAAAGATGCAAGAAAATTAGAGAATGCAAACAAACTG
GAAGATGGAGAAGATAAGAATGGAGAAGCGAATAAGGTAACAACACAACGCCCCTCTAAT
CCGTTTGCAAAATCATCTAACAACAAACAAAGTGCATCCTTCCTTGATTCCCTCAAGAAA
AAGGTGAAAACTGACAGATGA

Peptide Sequence

PEP ID

XP_016502169.1
PEP Infomation

PREDICTED: WD repeat and HMG-box DNA-binding protein 1-like [Nicotiana tabacum]
Sequence

MKIRSIKMREAHKSSNGVGSFCSVLWDQQGEHIVTASSSDSSICIQDAFLPANPPKIVRH
HRDGVTALALSPNFTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRTLAFNRSGTMLA
AAGDDEGIKLINTIDGSIARVLKGHRGSITGIAFDPKSEYLASVDSIGTVMIWELQSGNT
IHVLKGIAPVIGSDFSSMNIVGWSPDGELLAVPSLKNDVVMYDRDTAEKLFSLRGDHVQP
ICFLSWSPNGKYMATSGLDRQVLIWDVDKKQDIDRQKFDNRVTCMAWKPIGNALAVIDIM
GKYGIWESAVPSSMRSPTENVPVLGSKNGHGLLFFDEEEENPSASGSLSDLGEDSHGESE
PFSRKRLRKQHSFDDGWEEDAKEEFELLPKAEPRKKAPHGHTDSSDNKRNELKNVPISAG
QKMQEAFQPGTTPQLPGKRRFLCYSMLGSITAMEHDGYSHIEIDFHDTSSGPRVPAMTDY
FGFTMASLNENGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEEEEVRAVALGTGW
VAAVTSCNFLRIFTEGGLQRHILSLDGPVVTAVGYKDELAVVTHASPPLPSNEQILEFRV
FNIRNGIQPRRGRLPLTPGSCLSWFGFSEEGHLSSFDSKGVLRVFTNQYGGSWLPLFSAS
KLKKPEENYWVVGLNTSKLFCVICKSPDYFPEATPKPILTLLDLSFPLASSDLGAENLEN
EFIMNNMHLHRIQSTIEEMEAAGEDTSLLDDEAFNTDAALDRCILRLIASCCNGDKLVRA
TELVKLLALEKSVKGAIKLVTALKLPNLAERFNAILEERLNKETTGSTIPASTELKCDTS
FNAQAALTKSHFTAESSKRLELESSPSQNLLAPSLTKKRSLEEPTKDVNMDTENARARKL
EMAREFKNAFDLKNSKKLKDEKDKADEVKDARKLENANKLEDGEDKNGEANKVTTQRPSN
PFAKSSNNKQSASFLDSLKKKVKTDR

Transcript Sequence

Gene sequence data has not been registered.